Clean up remaining v1 refs across repo docs #278

Workflow file for this run

	name: CI

	on:
	push:
	branches: [main, develop]
	pull_request:
	branches: [main, develop]

	# Cancel stale runs on the same PR/branch
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	defaults:
	run:
	shell: bash

	jobs:
	# ── Backend: pytest ──────────────────────────────────────────────────────────
	backend-tests:
	name: Backend tests (pytest)
	runs-on: ubuntu-latest
	timeout-minutes: 30

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: pip
	cache-dependency-path: backend/pyproject.toml

	- name: Install backend dependencies
	working-directory: backend
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev]" \|\| pip install -e "." \|\| pip install -r requirements.txt \|\| true
	# Fallback: install via pyproject.toml extras if available
	pip install pytest httpx anyio pytest-anyio 2>/dev/null \|\| true

	- name: Run pytest (all tests, short tracebacks)
	working-directory: backend
	env:
	PYTHONPATH: ${{ github.workspace }}/backend
	GLOSSA_DATA_DIR: ${{ runner.temp }}/glossa_test_data
	GLOSSA_DEV_MODE: "1"
	run: \|
	python -m pytest tests/ \
	--tb=short \
	-q \
	--ignore=tests/test_pipelines_gpu.py \
	--ignore=tests/test_install_gpu.py \
	-x \
	2>&1 \| tee pytest_output.txt
	exit ${PIPESTATUS[0]}

	- name: Upload pytest output on failure
	if: failure()
	uses: actions/upload-artifact@v4
	with:
	name: pytest-output
	path: backend/pytest_output.txt
	retention-days: 7

	# ── Frontend: build + Playwright ────────────────────────────────────────────────
	frontend-tests:
	name: Frontend tests (Playwright)
	runs-on: ubuntu-latest
	timeout-minutes: 25
	needs: [] # run in parallel with backend-tests

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: pip
	cache-dependency-path: backend/pyproject.toml

	- name: Install backend dependencies
	working-directory: backend
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev]" \|\| pip install -e "." \|\| true

	- name: Start backend in background
	working-directory: backend
	env:
	GLOSSA_DATA_DIR: ${{ runner.temp }}/glossa_playwright_data
	GLOSSA_DEV_MODE: "1"
	PYTHONPATH: ${{ github.workspace }}/backend
	run: \|
	python -m uvicorn glossa_lab.main:app \
	--host 127.0.0.1 --port 8001 \
	--log-level warning &
	echo $! > /tmp/backend.pid
	# Wait for backend to be healthy (up to 30s)
	for i in $(seq 1 30); do
	if curl -sf http://127.0.0.1:8001/api/v1/health > /dev/null 2>&1; then
	echo "Backend healthy after ${i}s"
	break
	fi
	sleep 1
	done
	curl -sf http://127.0.0.1:8001/api/v1/health \|\| echo "Backend may not be running"

	- name: Set up Node.js 20
	uses: actions/setup-node@v4
	with:
	node-version: "20"
	cache: npm
	cache-dependency-path: frontend/package-lock.json

	- name: Install frontend dependencies
	working-directory: frontend
	run: npm ci

	- name: Build frontend
	working-directory: frontend
	run: npm run build

	- name: Install Playwright browsers (Chromium only)
	working-directory: frontend
	run: npx playwright install chromium --with-deps

	- name: Run Playwright tests
	working-directory: frontend
	env:
	CI: "true"
	BACKEND_RUNNING: "true"
	run: \|
	npx playwright test \
	--reporter=github \
	2>&1 \| tee playwright_output.txt
	exit ${PIPESTATUS[0]}

	- name: Stop backend
	if: always()
	run: kill $(cat /tmp/backend.pid) 2>/dev/null \|\| true

	- name: Upload Playwright report
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: playwright-report
	path: frontend/playwright-report/
	retention-days: 7

	- name: Upload Playwright traces (failures only)
	if: failure()
	uses: actions/upload-artifact@v4
	with:
	name: playwright-traces
	path: frontend/test-results/
	retention-days: 7

	# ── Indus reproducibility: public validation suite (stdlib only) ─────────
	indus-public-checks:
	name: Indus public validation checks
	runs-on: ubuntu-latest
	timeout-minutes: 5
	needs: []

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"

	- name: Run public validation suite (stdlib only, no corpus access needed)
	run: \|
	python research/indus/indus-anchor-model/scripts/validation/run_all_public_checks.py \
	--data-dir research/indus/indus-anchor-model/data/public \
	--output-dir /tmp/indus-validation-outputs

	- name: Upload validation report
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: indus-validation-report
	path: /tmp/indus-validation-outputs/
	retention-days: 30

	# ── Shell wrappers: syntax + functional checks on all 3 OS ─────────────────
	shell-scripts:
	name: Shell wrappers (${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	timeout-minutes: 15
	needs: [] # run in parallel
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macos-latest, windows-latest]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: pip
	cache-dependency-path: backend/pyproject.toml

	# ── Bootstrap venv so wrappers can find it ────────────────────────────
	- name: Bootstrap venv (POSIX)
	if: runner.os != 'Windows'
	working-directory: backend
	run: \|
	python -m venv venv
	venv/bin/pip install --quiet --upgrade pip
	venv/bin/pip install --quiet -e ".[dev]"

	- name: Bootstrap venv (Windows)
	if: runner.os == 'Windows'
	working-directory: backend
	shell: cmd
	run: \|
	python -m venv venv
	venv\Scripts\pip install --quiet --upgrade pip
	venv\Scripts\pip install --quiet -e ".[dev]"

	# ── POSIX: shell.sh ───────────────────────────────────────────────────
	- name: shell.sh — syntax check (bash -n)
	if: runner.os != 'Windows'
	run: bash -n shell.sh

	- name: shell.sh — no-args shows usage (exit 0)
	if: runner.os != 'Windows'
	run: \|
	output=$(./shell.sh 2>&1 \|\| true)
	echo "$output"
	echo "$output" \| grep -qi "usage" \|\| { echo "FAIL: no usage line"; exit 1; }

	- name: shell.sh python — version
	if: runner.os != 'Windows'
	run: ./shell.sh python --version

	- name: shell.sh lint — backend passes ruff
	if: runner.os != 'Windows'
	run: ./shell.sh lint backend/

	# ── POSIX: setup-os.sh ────────────────────────────────────────────────
	- name: setup-os.sh — syntax check (bash -n)
	if: runner.os != 'Windows'
	run: bash -n setup-os.sh

	- name: setup-os.sh — no-args shows usage (exit 0)
	if: runner.os != 'Windows'
	run: \|
	output=$(./setup-os.sh 2>&1 \|\| true)
	echo "$output"
	echo "$output" \| grep -qi "usage\\|install\\|start\\|stop\\|status" \|\| \
	{ echo "FAIL: no usage line"; exit 1; }

	- name: setup-os.sh status — exits cleanly without backend running
	if: runner.os != 'Windows'
	run: ./setup-os.sh status 2>&1 \|\| true

	# ── Windows: shell.cmd ────────────────────────────────────────────────
	- name: shell.cmd — no-args shows usage (exit 0)
	if: runner.os == 'Windows'
	shell: cmd
	run: \|
	shell.cmd 2>&1 && echo USAGE_OK
	exit 0

	- name: shell.cmd python — version
	if: runner.os == 'Windows'
	shell: cmd
	run: shell.cmd python --version

	- name: shell.cmd lint — backend passes ruff
	if: runner.os == 'Windows'
	shell: cmd
	run: shell.cmd lint backend\

	# ── Windows: setup-os.cmd ─────────────────────────────────────────────
	- name: setup-os.cmd — no-args shows usage (exit 0)
	if: runner.os == 'Windows'
	shell: cmd
	run: \|
	setup-os.cmd 2>&1 && echo USAGE_OK
	exit 0

	- name: setup-os.cmd status — exits cleanly without service registered
	if: runner.os == 'Windows'
	shell: cmd
	run: \|
	setup-os.cmd status 2>&1
	exit 0

	# ── Evidence Graph: script smoke test ────────────────────────────────────────
	indus-evidence-scripts:
	name: Evidence Graph script smoke tests
	runs-on: ubuntu-latest
	timeout-minutes: 10
	needs: [] # run in parallel

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: pip
	cache-dependency-path: backend/pyproject.toml

	- name: Install pypdf for intake script
	run: pip install pypdf 2>/dev/null \|\| true

	- name: Test indus_intake.py --status exits cleanly
	working-directory: glossa-indus
	run: python scripts/indus_intake.py --status \|\| true

	- name: Test indus_claims.py exits cleanly
	working-directory: glossa-indus
	run: python scripts/indus_claims.py \|\| true

	- name: Verify sweep.yaml is valid YAML
	run: \|
	python -c "
	import yaml, sys
	with open('glossa-indus/config/sweep.yaml') as f:
	cfg = yaml.safe_load(f)
	assert 'sweep' in cfg, 'Missing sweep key'
	assert 'keywords' in cfg['sweep'], 'Missing keywords key'
	assert 'sources' in cfg['sweep'], 'Missing sources key'
	print('sweep.yaml OK:', cfg['sweep']['name'])
	" \|\| python -c "
	# Fallback without PyYAML
	with open('glossa-indus/config/sweep.yaml') as f:
	content = f.read()
	assert 'schema_version' in content
	assert 'keywords' in content
	print('sweep.yaml basic check OK')
	"

	- name: Verify claim extraction output exists
	run: \|
	python -c "
	import json, pathlib
	claims_dir = pathlib.Path('glossa-indus/claims/extracted_claims')
	files = list(claims_dir.glob('*.json'))
	assert len(files) >= 2, f'Expected >= 2 claim files, found {len(files)}'
	total = sum(json.loads(f.read_text())['total_claims'] for f in files)
	assert total >= 22, f'Expected >= 22 total claims, found {total}'
	print(f'Claims check OK: {len(files)} files, {total} total claims')
	"

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Clean up remaining v1 refs across repo docs #278

Workflow file

Clean up remaining v1 refs across repo docs #278

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Workflow file for this run