plaid/DESCRIPTION at main · bigomics/plaid · GitHub

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Package: plaid
Title: PLAID ultrafast gene set enrichment scoring
Version: 0.99.19
Authors@R: c(
    person("Ivo", "Kwee", , "ivo.kwee@bigomics.ch", role = "aut",
        comment = c(ORCID = "0000-0002-2751-4218")),
    person("Antonino", "Zito", , "antonino.zito@bigomics.ch", role = "cre",
        comment = c(ORCID = "0000-0003-1931-984X"))
  )
Description: PLAID (Pathway Level Average Intensity Detection) is an ultra-fast method to compute single-sample enrichment scores for gene expression or proteomics data. For each sample, plaid computes the gene set score as the average intensity of the genes/proteins in the gene set. The output is a gene set score matrix suitable for further analyses.
License: GPL-3
URL: https://github.com/bigomics/plaid, https://bigomics.github.io/plaid/
BugReports: https://github.com/bigomics/plaid/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    sparseMatrixStats,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
biocViews: GeneSetEnrichment, GeneExpression, Proteomics
Depends: R (>= 4.3.3)
Imports:
    Matrix,
    MatrixGenerics,
    matrixStats,
    methods,
    parallel,
    Rfast,
    qlcMatrix,
    GSVA,
    fgsea,
    SummarizedExperiment,
    BiocSet,
    stats,
    utils
VignetteBuilder: knitr