VFDistiller/.gitignore at main · biotec-line/VFDistiller · GitHub

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# ===========================================================================
# VFDistiller .gitignore — GitHub Release
# ===========================================================================

# ---------------------------------------------------------------------------
# Genomreferenzen (mehrere GB, niemals in Git)
# ---------------------------------------------------------------------------
*.fa
*.fasta
*.fna
*.fai
*.fa.gz
*.fasta.gz

# ---------------------------------------------------------------------------
# Datenbanken (nutzerspezifisch, werden zur Laufzeit erzeugt)
# ---------------------------------------------------------------------------
*.db
*.sqlite
*.db-journal
*.db-wal
*.db-shm

# ---------------------------------------------------------------------------
# Persönliche Daten / Testdaten / Credentials
# ---------------------------------------------------------------------------
_persönlich/
converted_23andme_vcfs/
.env
.env.*
credentials.json
client_secret*.json
token.json
*.pem
*.key
keyring/

# ---------------------------------------------------------------------------
# Nutzerkonfiguration (enthält API-Keys und lokale Pfade)
# ---------------------------------------------------------------------------
variant_fusion_settings.json
resources_config.json

# ---------------------------------------------------------------------------
# Laufzeit-generierte Daten
# ---------------------------------------------------------------------------
cache.json
distiller_debug.log
logs/
.vf_instance.lock

# ---------------------------------------------------------------------------
# Data-Verzeichnis (werden zur Laufzeit heruntergeladen)
# ---------------------------------------------------------------------------
data/lightdb_config.json
data/annotations/*_index.pkl
data/annotations/*.gtf.gz
data/annotations/*.gtf

# ---------------------------------------------------------------------------
# Cache / Bytecode
# ---------------------------------------------------------------------------
__pycache__/
*.py[cod]
*.pyo
.mypy_cache/
.pytest_cache/

# ---------------------------------------------------------------------------
# Cython Build-Artefakte
# ---------------------------------------------------------------------------
cython_hotpath/*.so
cython_hotpath/*.pyd
cython_hotpath/*.c
cython_hotpath/*.html
cython_hotpath/build/

# ---------------------------------------------------------------------------
# Build-Output / Releases
# ---------------------------------------------------------------------------
dist/
build/
_OUTPUT EXE/
releases/
# Sensible Store-Daten (doppelt gesichert):
store_identity.json
store_settings.json

# ---------------------------------------------------------------------------
# Archiv- und Wartungsversionen (nicht fuer GitHub)
# ---------------------------------------------------------------------------
_archive/
_alt/
_WARTUNG/
docs/superpowers/

# ---------------------------------------------------------------------------
# Interne Entwicklungs-Dateien
# ---------------------------------------------------------------------------
AUFGABEN.txt
TEST.txt
TESTS.txt
TESTERGEBNISSE.txt
LOCK.txt
LOCK.*.txt
BUGREPORT.md
DIAGNOSE_REPORT.md
SKILL.md
tmpclaude-*
classes.txt
RELEASE_PLAN.md
_persönlich/
.claude/
COMPLETE_PROJECT_CONTEXT.txt

# ---------------------------------------------------------------------------
# OS-spezifisch
# ---------------------------------------------------------------------------
.DS_Store
Thumbs.db
desktop.ini
*.lnk

# ---------------------------------------------------------------------------
# IDE
# ---------------------------------------------------------------------------
.vscode/
.idea/
*.swp
*.swo
*~

# Build-Artefakte (zu groß für GitHub)
store_package/*.exe
*.exe
*.msi
*.msix
# ---------------------------------------------------------------------------
# Interne Steuerungsdateien
# ---------------------------------------------------------------------------
DECISIONS.md
PORTIERUNGSPLAN.md
TODO.md
DONE.md