CHANGELOG

-- focus version history --

-> focus 2.0.0 (2026-05-30):
- Full rewrite of FOCUS into focus package
- CLI separated from core logic (cli.py vs focus.py)
- profile() added as a clean programmatic entry point
- Unit test suite with 99% coverage (57 tests)
- Fake FASTQ test data added
- Cross-validation tests comparing focus vs original FOCUS output
- pyproject.toml replaces setup.py
- Dockerfile and Docker/Dockerfile updated for new package name

-- Original FOCUS version history --

-> FOCUS 1.6:
- Add `focus_database_utils` to add genomes into the database

-> FOCUS 1.2:
- FOCUS on pip as metagenomics-focus
- README edits

-> FOCUS 1.1:
- Setuptools
- Set FOCUS to be agnostic to the location of the script

-> FOCUS 1.0:
- Refactor to Python 3

-> FOCUS 0.31:
- Parameter "-s" for multiple samples is not required anymore

-> FOCUS 0.3:
- Fixed minor bug in the STAMP input creation

-> FOCUS 0.28:
- Database updated (08/08/2015) with 2785 complete genomes
- Multiple sample support with STAMP-compatible output

-> FOCUS 0.24:
- Fixed Jellyfish 2.x compatibility