Repositories list

• clarity_epp

  Public
  Clarity LIMS epp scripts

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•11 pull request•Updated Jul 3, 2026Jul 3, 2026

• HammingDistanceCalculator

  Public
  Calculates the hamming distance of sequences

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Jul 2, 2026Jul 2, 2026

• DIMSdb

  Public
  database for Direct Infusion Mass Spectrometry pipeline

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2026Jun 30, 2026

• du-viewer

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2026Jun 26, 2026

• DxNextflowRNA

  Public
  Nextflow

  •

  MIT License

  •00 forks•11 star•00 issues•22 pull requests•Updated Jun 23, 2026Jun 23, 2026

• DIMS

  Public
  Direct Infusion Mass Spectrometry pipeline

  Nextflow

  •

  MIT License

  •22 forks•22 stars•1111 issues•33 pull requests•Updated Jun 23, 2026Jun 23, 2026

• CustomModules

  Public
  R

  •

  MIT License

  •00 forks•33 stars•00 issues•22 pull requests•Updated Jun 23, 2026Jun 23, 2026

• tucan

  Public
  Python

  •

  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 19, 2026Jun 19, 2026

• Epi2Me_wf-human-variation

  Public
  Nextflow

  •

  Other

  •8383 forks•00 stars•00 issues•11 pull request•Updated Jun 18, 2026Jun 18, 2026

• rsync_to_rdisc

  Public
  Daemon to rsync data from HPC to bgarray

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 15, 2026Jun 15, 2026

• USEQ_tools

  Public
  Utility scripts to work with Genologics Clarity LIMS

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•22 pull requests•Updated May 27, 2026May 27, 2026

• DxNextflowPG

  Public
  Repo with scripts to process pharmacogenetic data.

  Nextflow

  •

  MIT License

  •00 forks•00 stars•11 issue•11 pull request•Updated May 20, 2026May 20, 2026

• Modules

  Public
  Test repo to host nf-core style modules

  00 forks•00 stars•00 issues•11 pull request•Updated May 18, 2026May 18, 2026

• sturgeon

  Public
  Sturgeon is a CNS neural network classifier

  nanoporetumorclassification+ 1

  nanoporetumorclassificationcns

  Python

  •

  Other

  •1111 forks•4949 stars•22 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• nf-core-tools

  Public
  Python package with helper tools for the nf-core community.

  Python

  •

  MIT License

  •250250 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• GIABEval

  Public
  Genome-in-a-bottle evaluation tool to determine statistics

  Nextflow

  •

  MIT License

  •00 forks•22 stars•00 issues•22 pull requests•Updated Apr 22, 2026Apr 22, 2026

• AdvancedBioinformaticsCourse

  Public
  Creative Commons Zero v1.0 Universal

  •00 forks•44 stars•00 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• ood_rstudio

  Public
  App to start Rstudio server on HPC node via OpenOndemand

  HTML

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• Dx_resources

  Public
  Resources used in diagnostics pipelines

  Python

  •

  MIT License

  •00 forks•33 stars•1515 issues•22 pull requests•Updated Apr 13, 2026Apr 13, 2026

• alissa_interpret_client

  Public archive
  Alissa Interpret Public API Client

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• clarity_portal

  Public
  Clarity LIMS portal app

  Python

  •

  MIT License

  •00 forks•00 stars•11 issue•22 pull requests•Updated Feb 20, 2026Feb 20, 2026

• pgsc_calc

  Public
  Frozen version of - The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

  Nextflow

  •

  Apache License 2.0

  •4545 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• DxNextflowTestData

  Public
  Public Repository to host test data

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• DxNextflowWES

  Public
  Genome Diagnostics Nextflow WES workflow

  Nextflow

  •

  MIT License

  •11 fork•77 stars•66 issues•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• TSO500_CNV_Tool

  Public
  TSO500 tool to visualise copy number and allele-fraction information

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 6, 2026Jan 6, 2026

• franklin_client

  Public
  Python package for Franklin API

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 10, 2025Nov 10, 2025

• clarity_epp2

  Public
  Clarity LIMS epp scripts v2

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Oct 24, 2025Oct 24, 2025

• DIMSpect_GUI

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 3, 2025Oct 3, 2025

• hpcguix-web

  Public archive
  The code that drives https://hpc.guix.info/browse.

  JavaScript

  •

  GNU Affero General Public License v3.0

  •22 forks•1212 stars•33 issues•00 pull requests•Updated Sep 14, 2025Sep 14, 2025

• MUC1_reassembly

  Public
  Small nextflow pipeline to reassembly the MUC1 to identify the VNTR

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 5, 2025Sep 5, 2025