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    • Pipeline to process duplex sequencing data.
      Python
      MIT License
      1000Updated Jun 26, 2026Jun 26, 2026
    • Python
      Other
      29000Updated Jun 26, 2026Jun 26, 2026
    • Demultiplex reads and count sequences of interest from Nanopore data
      Nextflow
      MIT License
      0000Updated Jun 25, 2026Jun 25, 2026
    • R CLI tool to calculate duplex sequencing QC metrics
      R
      GNU Affero General Public License v3.0
      5000Updated Jun 23, 2026Jun 23, 2026
    • MultiQC plugin for visualising duplex sequencing metrics
      Python
      4000Updated Jun 16, 2026Jun 16, 2026
    • nabseq_nf

      Public
      Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells)
      Nextflow
      Other
      5000Updated Jun 2, 2026Jun 2, 2026
    • Performs archiving and transfer of Nanopore sequencing data
      Python
      MIT License
      1300Updated Nov 16, 2025Nov 16, 2025
    • Metagenomic classification of long-read sequencing data
      Python
      Other
      35000Updated Oct 9, 2025Oct 9, 2025
    • rnaseq-QC

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      MIT License
      881000Updated Aug 29, 2025Aug 29, 2025
    • A web app for generating sample sheets from plate designs and integrating FACS data
      R
      1011Updated Jul 11, 2025Jul 11, 2025
    • Python
      Other
      29000Updated Jul 1, 2025Jul 1, 2025
    • Nextflow
      Other
      7000Updated Apr 14, 2025Apr 14, 2025
    • workflowR analysis code for rare mutation duplex sequencing project (G000204)
      R
      GNU Affero General Public License v3.0
      1000Updated Mar 25, 2025Mar 25, 2025
    • Data, code and analysis related to TIRE-seq manuscript
      HTML
      GNU General Public License v3.0
      0100Updated Mar 4, 2025Mar 4, 2025
    • Code for manuscript: A Dataset Examining Technical Factors on Fixed White Blood Cell Single-Cell RNA-Seq
      HTML
      GNU General Public License v3.0
      0000Updated Oct 16, 2024Oct 16, 2024
    • Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
      Nextflow
      MIT License
      3000Updated Sep 9, 2024Sep 9, 2024
    • wf-16s

      Public
      Modify the schema.json to make it compatible with Seqera
      Nextflow
      Other
      7000Updated Jun 5, 2024Jun 5, 2024
    • Quality filtering on paired reads
      C++
      MIT License
      0000Updated May 10, 2024May 10, 2024
    • Manuscript: A Risk-reward Examination of Sample Multiplexing Reagents for Single Cell RNA-Seq
      Shell
      GNU General Public License v3.0
      0000Updated May 7, 2024May 7, 2024
    • qc-pipe

      Public archive
      Multi-purpose pipeline for generating QC metrics from sequencing data
      Python
      MIT License
      0200Updated Jun 13, 2023Jun 13, 2023
    • Snakemake pipeline for calling somatic variants from amplicon data using pisces
      Python
      MIT License
      0000Updated Nov 16, 2022Nov 16, 2022
    • BioNix translation of WEHIGenomicsRnd/qc-pipe
      Nix
      2000Updated Nov 8, 2022Nov 8, 2022
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