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@WEHIGenomicsRnD WEHI Genomics R&D

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    22 repositories

    • duplex-seq-pipeline

      Public
      Pipeline to process duplex sequencing data.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • wf-clone-validation-v1.8

      Public
      Python
      •
      Other
      •29•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • nanopore-demux-count

      Public
      Demultiplex reads and count sequences of interest from Nanopore data
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • calculate-duplex-metrics

      Public
      R CLI tool to calculate duplex sequencing QC metrics
      R
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • duplex-multiqc

      Public
      MultiQC plugin for visualising duplex sequencing metrics
      Python
      •4•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • nabseq_nf

      Public
      Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells)
      Nextflow
      •
      Other
      •5•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • nanopore-transfer-automation

      Public
      Performs archiving and transfer of Nanopore sequencing data
      automationnanoporetransfer
      automationnanoporetransferarchivingsequencinglong-readminionpromethion
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 16, 2025Nov 16, 2025

    • wf-metagenomics

      Public
      Metagenomic classification of long-read sequencing data
      Python
      •
      Other
      •35•0•0•0•Updated Oct 9, 2025Oct 9, 2025

    • rnaseq-QC

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •881•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • celseq-sample-sheet-generator

      Public
      A web app for generating sample sheets from plate designs and integrating FACS data
      R
      •1•0•1•1•Updated Jul 11, 2025Jul 11, 2025

    • wf-clone-validation

      Public
      Python
      •
      Other
      •29•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • wf-16s-latest

      Public
      Nextflow
      •
      Other
      •7•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • G000204_duplex

      Public
      workflowR analysis code for rare mutation duplex sequencing project (G000204)
      R
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • Manuscript_TIRE_seq

      Public
      Data, code and analysis related to TIRE-seq manuscript
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

    • DiB_fixed_WBC_scRNAseq

      Public
      Code for manuscript: A Dataset Examining Technical Factors on Fixed White Blood Cell Single-Cell RNA-Seq
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • ont-basecalling-demultiplexing

      Public
      Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • wf-16s

      Public
      Modify the schema.json to make it compatible with Seqera
      Nextflow
      •
      Other
      •7•0•0•0•Updated Jun 5, 2024Jun 5, 2024

    • qualfilter

      Public
      Quality filtering on paired reads
      C++
      •
      MIT License
      •0•0•0•0•Updated May 10, 2024May 10, 2024

    • Manuscript_Sample-Multiplexing-Oligo-Comparison

      Public
      Manuscript: A Risk-reward Examination of Sample Multiplexing Reagents for Single Cell RNA-Seq
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 7, 2024May 7, 2024

    • qc-pipe

      Public archive
      Multi-purpose pipeline for generating QC metrics from sequencing data
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 13, 2023Jun 13, 2023

    • somatic-amplicon-pipe

      Public
      Snakemake pipeline for calling somatic variants from amplicon data using pisces
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 16, 2022Nov 16, 2022

    • BioNix-qc-pipe

      Public
      BioNix translation of WEHIGenomicsRnd/qc-pipe
      Nix
      •2•0•0•0•Updated Nov 8, 2022Nov 8, 2022
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