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feat: ingestion configs for CryoSiam datasets (10348; 10490-10492)#676

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daniel-ji merged 29 commits into
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daniel-ji/cryosiam
Jul 10, 2026
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feat: ingestion configs for CryoSiam datasets (10348; 10490-10492)#676
daniel-ji merged 29 commits into
mainfrom
daniel-ji/cryosiam

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@daniel-ji daniel-ji commented May 2, 2026

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Should be merged after: #713 #719 #723.

one deposition (10348) and 3 datasets (10490-10492; general, chromatin, bacterium)

Also clean up some confusing tiltseries importer code logic. (behavior is exactly the same, see ingestion_tools/scripts/importers/tiltseries.py)

Also cap out color generation at max 20 distinct colors so that large instance segmentation masks don't take forever for color generation, and so that colors are actually discernible (with many colors, they all start to look the same) (see ingestion_tools/scripts/common/colors.py)

@daniel-ji daniel-ji force-pushed the daniel-ji/cryosiam branch from 2bb08d1 to 8d82ebd Compare July 9, 2026 23:23
@daniel-ji daniel-ji merged commit e2bbc89 into main Jul 10, 2026
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@daniel-ji daniel-ji deleted the daniel-ji/cryosiam branch July 10, 2026 00:14
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2 participants