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Downstream applications show warning about use of deprecated Pydantic feature

Status: Open.

#78 In linkml/linkml-store;

· eecavanna opened on Jun 11, 2026

MongoDBCollection.upsert does per-item round trips; switch to bulk_write

Status: Open.

#77 In linkml/linkml-store;

· turbomam opened on May 19, 2026

find_iter default page_size=100 is too small for large MongoDB collections

Status: Open.

#75 In linkml/linkml-store;

· turbomam opened on Apr 28, 2026

Bulk-fix 56 auto-fixable ruff violations

Status: Open.

#74 In linkml/linkml-store;

· turbomam opened on Apr 28, 2026

CI: add mypy type-checking (incremental / per-module)

Status: Open.

#73 In linkml/linkml-store;

· turbomam opened on Apr 28, 2026

Fix 4 undefined-name (F821) errors caught by ruff

Status: Open.

#72 In linkml/linkml-store;

· turbomam opened on Apr 28, 2026

CI: add ruff lint check

Status: Open.

#71 In linkml/linkml-store;

· turbomam opened on Apr 28, 2026

Allow custom ValidationPlugins in iter_validate_collection()

Status: Open.

#68 In linkml/linkml-store;

· turbomam opened on Apr 10, 2026

CLI requires heavy optional dependencies (matplotlib, scipy) for basic operations

Status: Open.

#65 In linkml/linkml-store;

· turbomam opened on Jan 22, 2026

Allow Client instantiation (in particular MongoClient instantiation), with an existing pymongo.MongoClient object

Status: Open.

#55 In linkml/linkml-store;

· sierra-moxon opened on Jun 11, 2025

When connecting to neo4j with explicit user=neo4j, the store code replaces that by bolt in the URL.

Status: Open.

#45 In linkml/linkml-store;

· maparent opened on Apr 20, 2025