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@lozuponelab

Lozupone Lab

We combine bioinformatics and experimental work to understand the driving factors of human microbiota composition in health and disease.​

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  1. AMON AMON Public

    Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

    Python 26 11

  2. SCNIC SCNIC Public

    Sparse Cooccurence Network Investigation for Compositional data

    Python 25 12

  3. q2-SCNIC q2-SCNIC Public

    A QIIME2 plugin for running SCNIC

    Python 4 6

  4. Source_of_Fecal_and_Oral_Bacteria_on_Hands Source_of_Fecal_and_Oral_Bacteria_on_Hands Public

    A repository containing data, methods and results for the manuscript The Prevalence and Source of Fecal and Oral Bacteria on Infant, Child and Adult Hands.

    Jupyter Notebook 1

  5. knowledge-source-mappings knowledge-source-mappings Public

    R 1 1

  6. CRS3123_omics_manuscript CRS3123_omics_manuscript Public

    code to reproduce analysis and figures for CRS3123 -omics manuscript (Apgar and Lyon et al., currently in submission)

    R 1

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