Repositories list

• chiron-platform

  Public
  Chiron Platform is a decentralized federated training platform for single-cell foundation models, built to train and orchestrate Tabula across distributed BioEn…

  TypeScript

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• bioengine

  Public
  BioEngine is a distributed AI platform that brings the power of cloud computing to bioimage analysis.

  pythonbioinformaticsdeep-learning+ 9

  pythonbioinformaticsdeep-learningmodel-zoogpu-computingimage-segmentationmicroscopyai-agentsbioimage-analysiscellpose+ 2

  Jupyter Notebook

  •

  MIT License

  •44 forks•55 stars•11 issue•22 pull requests•Updated Jun 29, 2026Jun 29, 2026

• aicell.io

  Public
  AICell Lab website

  Python

  •

  MIT License

  •77 forks•22 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• swegen-pgx-portal

  Public
  Public, AI-agent-guided pharmacogenomic analysis of the SweGen reference dataset via Safe Colab. Production realization of Figure 3 of the Safe Colab preprint.

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2026Jun 22, 2026

• safe-colab-deploy

  Public
  Public GitHub Pages deployment target for the private safe-data-share build

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2026Jun 22, 2026

• jupyterlab-k8s

  Public
  🪐 JupyterLab + VisualStudio Code workspaces for data science and knowledge graphs

  Dockerfile

  •

  MIT License

  •2323 forks•00 stars•00 issues•00 pull requests•Updated Jun 2, 2026Jun 2, 2026

• hypha-startup-services

  Public
  Hypha services run on startup, including weaviate collections.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•77 pull requests•Updated May 8, 2026May 8, 2026

• eubio-navigator

  Public
  AI Research Navigator for Euro-BioImaging Access Portal — AI for Access project

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• reef-imaging

  Public
  Software for controlling the reef imaging farm

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated May 3, 2026May 3, 2026

• squid-control

  Public
  Control Software for Squid

  Python

  •

  MIT License

  •22 forks•00 stars•22 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• safe-colab-deploy-dev

  Public
  Safe Colab Development Github Pages Deployer Repo

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• agent-lens

  Public
  AI Agents for Smart Microscopy

  JavaScript

  •

  MIT License

  •22 forks•11 star•33 issues•00 pull requests•Updated Apr 26, 2026Apr 26, 2026

• imagej.js

  Public
  ImageJ in the browser

  HTML

  •33 forks•2626 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• hypha-whisper-node

  Public
  Portable real-time speech-to-text node powered by Whisper and Jetson AGX Orin.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• ddls-course

  Public
  Data-Driven Life Sciences course website

  Jupyter Notebook

  •22 forks•66 stars•11 issue•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• 24agents.science

  Public
  TypeScript

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 27, 2026Feb 27, 2026

• sam3-concept-finetune

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• agent-skills

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• hypha-agents

  Public
  TypeScript

  •22 forks•11 star•44 issues•11 pull request•Updated Feb 18, 2026Feb 18, 2026

• hypha-artifact

  Public
  Python package for manipulating artifacts and files in Hypha

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 14, 2026Jan 14, 2026

• cellpose

  Public
  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •635635 forks•00 stars•00 issues•00 pull requests•Updated Oct 20, 2025Oct 20, 2025

• ri-scale-model-hub

  Public
  RI-Scale model hub

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2025Oct 9, 2025

• schema-agents

  Public
  A schema-based LLM framework for building multi-agent collaborative systems.

  Python

  •00 forks•44 stars•22 issues•77 pull requests•Updated Sep 5, 2025Sep 5, 2025

• hypha-chat

  Public
  TypeScript

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•55 pull requests•Updated Jul 11, 2025Jul 11, 2025

• euro-bioimaging-finder

  Public
  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Jul 10, 2025Jul 10, 2025

• aria-agents

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•22 issues•22 pull requests•Updated May 26, 2025May 26, 2025

• eurobioimaging-agents

  Public
  EuroBioImaging Agents based on Hypha Agents.

  TypeScript

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2025May 21, 2025

• research-navigator

  Public
  Research Navigator for BioImage's AI4Access project

  TypeScript

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2025May 9, 2025

• micro-farm-js

  Public
  TypeScript

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 8, 2025Apr 8, 2025

• web-demo

  Public
  Demo website to showcase projects.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2025Apr 7, 2025