Skip to content

@brainglobe BrainGlobe

Change the repository type filter

All

    Repositories list

    55 repositories

    • brainglobe-atlasapi

      Public
      A Python interface to access neuroanatomical atlases
      pythonvisualisationneuroscience
      pythonvisualisationneuroscienceregistrationmicroscopybrainatlases
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •67•182•238•18•Updated Jul 3, 2026Jul 3, 2026

    • cellfinder

      Public
      Automated 3D cell detection in very large images
      pythondeep-learningneuroscience
      pythondeep-learningneuroscienceimage-analysismicroscopyimagingneuroanatomycell-detection
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •77•229•71•19•Updated Jul 3, 2026Jul 3, 2026

    • brainglobe-utils

      Public
      Shared general purpose tools for the BrainGlobe project
      Python
      •
      MIT License
      •9•12•9•2•Updated Jul 3, 2026Jul 3, 2026

    • brainrender

      Public
      A Python package to visualise neuroanatomical data in atlas space
      visualizationpythonneuroscience
      visualizationpythonneuroscienceanatomy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •103•661•8•1•Updated Jul 2, 2026Jul 2, 2026

    • brainglobe.github.io

      Public
      brainglobe.info website
      brainglobe
      brainglobe
      Python
      •
      Creative Commons Attribution 4.0 International
      •32•14•54•3•Updated Jun 30, 2026Jun 30, 2026

    • brainglobe-data-api-connectivity

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•14•1•Updated Jun 29, 2026Jun 29, 2026

    • brainglobe-registration

      Public
      Registration to BrainGlobe atlases in napari using Elastix
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•29•26•7•Updated Jun 21, 2026Jun 21, 2026

    • pynutil-documentation

      Public
      the docs for pynutil. the main pynutil repo is at https://github.com/Neural-Systems-at-UIO/pynutil
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • brainglobe-stitch

      Public
      A napari plugin for stitching large tiled 3D imaging datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•7•8•2•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-template-builder

      Public
      Build unbiased anatomical templates from individual images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•13•30•2•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-workflows

      Public
      Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•12•31•0•Updated Jun 2, 2026Jun 2, 2026

    • brainrender-napari

      Public
      A napari plugin to render BrainGlobe atlases and associated data as layers.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•24•39•7•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-meta

      Public
      (Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•10•6•0•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-heatmap

      Public
      Rendering anatomical heatmaps with brainrender and matplotlib
      visualizationatlasneuroanatomy
      visualizationatlasneuroanatomybrainglobe
      Python
      •
      MIT License
      •27•51•14•11•Updated Jun 2, 2026Jun 2, 2026

    • morphapi

      Public
      A Python package to download neuronal morphologies
      Python
      •
      MIT License
      •8•17•3•0•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-segmentation

      Public
      Segmentation of anatomical structures in a common coordinate space
      neurosciencesegmentationneuroanatomy
      neurosciencesegmentationneuroanatomynaparibrainregcellfinder
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•36•12•0•Updated Jun 2, 2026Jun 2, 2026

    • brainreg

      Public
      Automated 3D brain registration with support for multiple species and atlases.
      neuroscienceregistrationmicroscopy
      neuroscienceregistrationmicroscopybrainneuroanatomyatlases
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •37•149•17•1•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-napari-io

      Public
      Read and write files from the BrainGlobe neuroanatomy suite
      napari-plugin
      napari-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•15•3•0•Updated Jun 2, 2026Jun 2, 2026

    • brainglobe-space

      Public
      Anatomical space conventions made easy.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•12•2•1•Updated Jun 2, 2026Jun 2, 2026

    • atlas-forge

      Public
      Scripts used for building new templates and atlases
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•4•0•Updated May 26, 2026May 26, 2026

    • atlas-conversion-2d

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 22, 2026Apr 22, 2026

    • brainglobe-ccf-translator

      Public
      A tool for translating between common coordinate frameworks using deformation matrices.
      Python
      •
      MIT License
      •2•13•14•0•Updated Apr 13, 2026Apr 13, 2026

    • brainglobe-data-api-volume

      Public
      An API for accessing atlas registered 3D volumetric data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•3•1•Updated Mar 20, 2026Mar 20, 2026

    • slides-CBIAS-2025

      Public archive
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • slides-IrvHelgaCooperPrize-2025

      Public archive
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Nov 10, 2025Nov 10, 2025

    • slides-neuropixels-aligning-spikes-histology

      Public
      Slides for the UCL Neuropixels course - "Aligning spikes to histology with BrainGlobe"
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Oct 23, 2025Oct 23, 2025

    • course-whole-brain-microscopy-analysis

      Public
      Materials for the Whole brain microscopy analysis with BrainGlobe and napari course
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•2•0•Updated Oct 13, 2025Oct 13, 2025

    • .github

      Public
      Common templates for BrainGlobe repositories.
      0•6•0•0•Updated Oct 10, 2025Oct 10, 2025

    • slides-EuroSciPy-2025

      Public archive
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Aug 20, 2025Aug 20, 2025

    • napari-experimental

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•4•0•Updated Aug 7, 2025Aug 7, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.