Repositories list

• clearscale

  Public
  Clear multiscale image metadata manipulation in python

  pythonmetadataimage-processing+ 8

  pythonmetadataimage-processingmultiscalebioimage-analysisneuroglancerbioimageome-zarrprecomputedome-ngff+ 1

  Python

  •

  Other

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• ilastik

  Public
  ilastik-shell, applets, and workflows to string them together.

  pythonmachine-learningqt+ 1

  pythonmachine-learningqtilastik

  Python

  •

  Other

  •185185 forks•402402 stars•546546 issues•3535 pull requests•Updated Jul 8, 2026Jul 8, 2026

• app-pass

  Public
  Fix common issues in Mach-O binaries for notarization

  macosapplemach-o+ 6

  macosapplemach-omacosxgatekeepercodesigningapp-bundlesnotarizationapp-bundle

  Python

  •

  MIT License

  •11 fork•44 stars•22 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• fastfilters

  Public
  fast gaussian and derivative convolutional filters

  C++

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• ilastik.github.io

  Public
  HTML

  •

  Other

  •1818 forks•33 stars•2222 issues•99 pull requests•Updated Jun 29, 2026Jun 29, 2026

• volumina

  Public
  Volume Slicing and Editing

  Python

  •

  Other

  •8585 forks•3434 stars•2727 issues•1818 pull requests•Updated Jun 29, 2026Jun 29, 2026

• publish-conda-stack

  Public
  Scripts to update our published conda packages when our recipes have changed.

  Python

  •

  MIT License

  •33 forks•00 stars•11 issue•22 pull requests•Updated Jun 22, 2026Jun 22, 2026

• ilastik-carving-tools

  Public
  tools for carving

  C++

  •

  MIT License

  •44 forks•11 star•00 issues•11 pull request•Updated Jun 22, 2026Jun 22, 2026

• hytra

  Public
  Python module for multi HYpotheses TRAcking

  trackingilastik

  trackingilastik

  Python

  •

  MIT License

  •77 forks•22 stars•55 issues•22 pull requests•Updated Jun 22, 2026Jun 22, 2026

• marching_cubes

  Public
  Standalone marching cubes implementation and Python bindings

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1414 forks•9999 stars•33 issues•33 pull requests•Updated Jun 22, 2026Jun 22, 2026

• ndstructs

  Public
  Utility classes to deal with 5d arrays

  Python

  •

  MIT License

  •22 forks•11 star•11 issue•44 pull requests•Updated Jun 22, 2026Jun 22, 2026

• ilastik-conda-recipes

  Public
  Conda recipes for building ilastik dependencies.

  Shell

  •1616 forks•99 stars•77 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• ilastik-oc-feats-cookiecutter

  Public
  cookiecutter for ilastik object feature plugins

  cookiecutterilastik

  cookiecutterilastik

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2026Jun 5, 2026

• dpct

  Public
  Dynamic Programming Cell Tracking Solver

  C++

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 29, 2026May 29, 2026

• tiktorch

  Public
  Tiktorch

  Python

  •

  MIT License

  •1010 forks•1212 stars•4242 issues•55 pull requests•Updated May 7, 2026May 7, 2026

• ilastik4ij

  Public
  ImageJ plugins to run ilastik workflows

  Java

  •

  MIT License

  •1919 forks•3030 stars•2323 issues•66 pull requests•Updated Mar 9, 2026Mar 9, 2026

• ilastik-napari

  Public
  ilastik plugin for napari

  ilastiknapari-plugin

  ilastiknapari-plugin

  Python

  •

  MIT License

  •33 forks•1515 stars•44 issues•22 pull requests•Updated Mar 2, 2026Mar 2, 2026

• nature_methods_multicut_pipeline

  Public
  connectomicsneuron-segmentation

  connectomicsneuron-segmentation

  Python

  •

  Other

  •22 forks•2222 stars•11 issue•11 pull request•Updated Jan 6, 2026Jan 6, 2026

• conda-3rdparty

  Public
  extract license info for conda environments

  condalicense-managementlicenses+ 2

  condalicense-managementlicensesconda-environmentconda-packages

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 23, 2025Dec 23, 2025

• ilastikrag

  Public
  ND Region Adjacency Graph with edge feature algorithms

  Jupyter Notebook

  •

  Other

  •22 forks•00 stars•00 issues•11 pull request•Updated Nov 24, 2025Nov 24, 2025

• fastfilters2

  Public
  SIMD-accelerated 2D and 3D image features

  C++

  •

  MIT License

  •00 forks•11 star•00 issues•66 pull requests•Updated Oct 27, 2025Oct 27, 2025

• multiHypothesesTracking

  Public
  C++

  •

  MIT License

  •77 forks•1212 stars•22 issues•00 pull requests•Updated Jun 10, 2025Jun 10, 2025

• webilastik

  Public
  A revision of classic ilastik to drop legacy stuff and make it portable

  Python

  •

  MIT License

  •33 forks•88 stars•99 issues•00 pull requests•Updated Apr 7, 2025Apr 7, 2025

• ilastiktools-fork

  Public
  tools for carving

  C++

  •44 forks•00 stars•00 issues•11 pull request•Updated Mar 5, 2025Mar 5, 2025

• bioimage-io-resources

  Public
  resources for the BioImage.IO Model Zoo

  HTML

  •44 forks•22 stars•11 issue•00 pull requests•Updated Dec 16, 2024Dec 16, 2024

• cloud_ilastik

  Public
  APIs for running ilastik inside HPB infra

  Python

  •

  Other

  •00 forks•11 star•1515 issues•33 pull requests•Updated Nov 18, 2024Nov 18, 2024

• unique-bincount-benchmark

  Public
  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Sep 4, 2024Sep 4, 2024

• wsdt

  Public
  watershed on distance transform

  Python

  •11 fork•55 stars•00 issues•11 pull request•Updated Dec 4, 2023Dec 4, 2023

• ilastik-feature-selection

  Public
  Select filter features with mutual-information-based methods

  Jupyter Notebook

  •

  MIT License

  •66 forks•1111 stars•11 issue•11 pull request•Updated Dec 4, 2023Dec 4, 2023

• neuroglancer

  Public
  WebGL-based viewer for volumetric data

  TypeScript

  •

  Apache License 2.0

  •369369 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2023Aug 11, 2023