Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

A neuromechanical model of adult Drosophila melanogaster.

Sequential inverse kinematics pipeline.

Custom codes for Flysta3D paper.

Toolkit for trajectory data processing, network construction and analysis

Tracking, classification, and analysis tools for courtship in the fly.

Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster

Repository for RDN-WDP paper

Automated detection of Failed Negative Geotaxis (FNG) events and fall distance in Drosophila locomotor assays. Fork of FreeClimber (Spierer et al., 2020).

Python and R pipeline to predict sgRNA efficiency in D.mel via machine learning algorithms trained and optimized on CRIPSR pooled gene essentiality screens

Immobility bout detection for the Drosophila forced swim task from top-down video. Frame differencing, temporal smoothing, and configurable thresholds. Outputs bout timing, summary statistics, and trajectory verification figures.

Analysis of clock neurons in Hemibrain data

Packaged and versioned Analysis functions for Shahar's cells

Data package for Drosophila melanogaster RNA-seq

Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.

Drosophila melanogaster IndSeq and PoolSeq genomics data in Asia and Europe

sg5 sgRNA Designer is a command-line tool for designing CRISPR sgRNAs targeting Drosophila melanogaster genes using the SpCas9/NGG system. Fetches gene sequences directly from the Ensembl REST API, scans both strands for NGG PAM sites, scores each candidate guide, and outputs a ranked list.

rna-seq pipeline for drosophila melanogaster: qc, trimming, alignment, and read counting (81.7% alignment, ~50m bp processed)

CCN 2026 Publication: An Analysis of Neuroidal Memory Formation within D. melanogaster

Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page